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    First name: Nagiza F.
    Last name: Samatova
    DBLP: 66/1466
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    Conference paper
    Wenbin Chen 0002, Zhengzhang Chen, Nagiza F. Samatova, Lingxi Peng, Jianxiong Wang, Maobin Tang.
    Solving the maximum duo-preservation string mapping problem with linear programming.
    Theor. Comput. Sci. 2014, Volume 530 (0) 2014
    Conference paper
    Qing Liu, Jeremy Logan, Yuan Tian, Hasan Abbasi, Norbert Podhorszki, Jong Youl Choi, Scott Klasky, Roselyne Tchoua, Jay F. Lofstead, Ron Oldfield, Manish Parashar, Nagiza F. Samatova, Karsten Schwan, Arie Shoshani, Matthew Wolf, Kesheng Wu, Weikuan Yu.
    Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks.
    Concurrency and Computation: Practice and Experience 2014, Volume 26 (0) 2014
    Conference paper
    John Jenkins, Xiaocheng Zou, Houjun Tang, Dries Kimpe, Robert B. Ross, Nagiza F. Samatova.
    RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication.
    Supercomputing - 29th International Conference, ISC 2014, Leipzig, Germany, June 22-26, 2014. Proceedings 2014 (0) 2014
    Conference paper
    Steve Harenberg, Ramona G. Seay, Stephen Ranshous, Kanchana Padmanabhan, Jitendra K. Harlalka, Eric R. Schendel, Michael P. O'Brien, Rada Chirkova, William Hendrix, Alok N. Choudhary, Vipin Kumar, Murali Doraiswamy, Nagiza F. Samatova.
    Memory-efficient Query-driven Community Detection with Application to Complex Disease Associations.
    Proceedings of the 2014 SIAM International Conference on Data Mining, Philadelphia, Pennsylvania, USA, April 24-26, 2014 2014 (0) 2014
    Conference paper
    David A. Boyuka II, Sriram Lakshminarasimhan, Xiaocheng Zou, Zhenhuan Gong, John Jenkins, Eric R. Schendel, Norbert Podhorszki, Qing Liu, Scott Klasky, Nagiza F. Samatova.
    Transparent in Situ Data Transformations in ADIOS.
    2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, Chicago, IL, USA, May 26-29, 2014 2014 (0) 2014
    Conference paper
    Xiaocheng Zou, Sriram Lakshminarasimhan, David A. Boyuka II, Stephen Ranshous, Houjun Tang, Scott Klasky, Nagiza F. Samatova.
    Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes.
    Euro-Par 2014 Parallel Processing - 20th International Conference, Porto, Portugal, August 25-29, 2014. Proceedings 2014 (0) 2014
    Conference paper
    Houjun Tang, Xiaocheng Zou, John Jenkins, David A. Boyuka II, Stephen Ranshous, Dries Kimpe, Scott Klasky, Nagiza F. Samatova.
    Improving Read Performance with Online Access Pattern Analysis and Prefetching.
    Euro-Par 2014 Parallel Processing - 20th International Conference, Porto, Portugal, August 25-29, 2014. Proceedings 2014 (0) 2014
    Conference paper
    Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Seung-Hoe Ku, Choong-Seock Chang, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova.
    ISABELA for effective in situ compression of scientific data.
    Concurrency and Computation: Practice and Experience 2013, Volume 25 (0) 2013
    Conference paper
    Jaya Kawale, Stefan Liess, Arjun Kumar, Michael Steinbach, Peter K. Snyder, Vipin Kumar, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi.
    A graph-based approach to find teleconnections in climate data.
    Statistical Analysis and Data Mining 2013, Volume 6 (0) 2013
    Conference paper
    Sriram Lakshminarasimhan, David A. Boyuka II, Saurabh V. Pendse, Xiaocheng Zou, John Jenkins, Venkatram Vishwanath, Michael E. Papka, Nagiza F. Samatova.
    Scalable in situ scientific data encoding for analytical query processing.
    The 22nd International Symposium on High-Performance Parallel and Distributed Computing, HPDC'13, New York, NY, USA - June 17 - 21, 2013 2013 (0) 2013
    Conference paper
    Zhengzhang Chen, William Hendrix, Hang Guan, Isaac K. Tetteh, Alok N. Choudhary, Fredrick H. M. Semazzi, Nagiza F. Samatova.
    Discovery of extreme events-related communities in contrasting groups of physical system networks.
    Data Min. Knowl. Discov. 2013, Volume 27 (0) 2013
    Conference paper
    Zhenhuan Gong, David A. Boyuka II, Xiaocheng Zou, Qing Liu, Norbert Podhorszki, Scott Klasky, Xiaosong Ma, Nagiza F. Samatova.
    PARLO: PArallel Run-Time Layout Optimization for Scientific Data Explorations with Heterogeneous Access Patterns.
    13th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing, CCGrid 2013, Delft, Netherlands, May 13-16, 2013 2013 (0) 2013
    Conference paper
    Eric R. Schendel, Steve Harenberg, Houjun Tang, Venkatram Vishwanath, Michael E. Papka, Nagiza F. Samatova.
    A Generic High-Performance Method for Deinterleaving Scientific Data.
    Euro-Par 2013 Parallel Processing - 19th International Conference, Aachen, Germany, August 26-30, 2013. Proceedings 2013 (0) 2013
    Conference paper
    Zhengzhang Chen, Yusheng Xie, Yu Cheng, Kunpeng Zhang, Ankit Agrawal, Wei-keng Liao, Nagiza F. Samatova, Alok N. Choudhary.
    Forecast Oriented Classification of Spatio-Temporal Extreme Events.
    IJCAI 2013, Proceedings of the 23rd International Joint Conference on Artificial Intelligence, Beijing, China, August 3-9, 2013 2013 (0) 2013
    Conference paper
    Zhengzhang Chen, Alok N. Choudhary, John Jenkins, Vipin Kumar, Anatoli V. Melechko, Jinfeng Rao, Nagiza F. Samatova, Fredrick H. M. Semazzi.
    Automatic Detection and Correction of Multi-class Classification Errors Using System Whole-part Relationships.
    Proceedings of the 13th SIAM International Conference on Data Mining, May 2-4, 2013. Austin, Texas, USA. 2013 (0) 2013
    Journal article
    John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, David A. Boyuka II, Eric R. Schendel, Neil Shah, Stéphane Ethier, Choong-Seock Chang, Jackie Chen, Hemanth Kolla, Scott Klasky, Robert B. Ross, Nagiza F. Samatova.
    ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying.
    Transactions on Large-Scale Data- and Knowledge-Centered Systems X - Special Issue on Database- and Expert-Systems Applications 2013, Volume 8220 (0) 2013
    Conference paper
    Doel L. Gonzalez, Saurabh V. Pendse, Kanchana Padmanabhan, Michael P. Angus, Isaac K. Tetteh, Shashank Srinivas, Andrea Villanes, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova.
    Coupled Heterogeneous Association Rule Mining (CHARM): Application Toward Inference of Modulatory Climate Relationships.
    2013 IEEE 13th International Conference on Data Mining, Dallas, TX, USA, December 7-10, 2013 2013 (0) 2013
    Conference paper
    Eric R. Schendel, Saurabh V. Pendse, John Jenkins, David A. Boyuka II, Zhenhuan Gong, Sriram Lakshminarasimhan, Qing Liu, Hemanth Kolla, Jackie Chen, Scott Klasky, Robert B. Ross, Nagiza F. Samatova.
    ISOBAR hybrid compression-I/O interleaving for large-scale parallel I/O optimization.
    The 21st International Symposium on High-Performance Parallel and Distributed Computing, HPDC'12, Delft, Netherlands - June 18 - 22, 2012 2012 (0) 2012
    Conference paper
    Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Yekaterina Shpanskaya, Jillian F. Banfield, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova.
    NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems.
    PLoS Computational Biology 2012, Volume 8 (0) 2012
    Journal article
    Zhengzhang Chen, William Hendrix, Nagiza F. Samatova.
    Community-based anomaly detection in evolutionary networks.
    J. Intell. Inf. Syst. 2012, Volume 39 (0) 2012
    Conference paper
    Eric R. Schendel, Ye Jin, Neil Shah, Jackie Chen, Choong-Seock Chang, Seung-Hoe Ku, Stéphane Ethier, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova.
    ISOBAR Preconditioner for Effective and High-throughput Lossless Data Compression.
    IEEE 28th International Conference on Data Engineering (ICDE 2012), Washington, DC, USA (Arlington, Virginia), 1-5 April, 2012 2012 (0) 2012
    Conference paper
    John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, Neil Shah, Eric R. Schendel, Stéphane Ethier, Choong-Seock Chang, Jacqueline Chen, Hemanth Kolla, Scott Klasky, Robert B. Ross, Nagiza F. Samatova.
    Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying.
    Database and Expert Systems Applications - 23rd International Conference, DEXA 2012, Vienna, Austria, September 3-6, 2012. Proceedings, Part II 2012 (0) 2012
    Conference paper
    Zhenhuan Gong, Sriram Lakshminarasimhan, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova.
    Multi-level Layout Optimization for Efficient Spatio-temporal Queries on ISABELA-compressed Data.
    26th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2012, Shanghai, China, May 21-25, 2012 2012 (0) 2012
    Conference paper
    Sriram Lakshminarasimhan, Prabhat Kumar, Wei-keng Liao, Alok N. Choudhary, Vipin Kumar, Nagiza F. Samatova.
    On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions.
    2012 International Green Computing Conference, IGCC 2012, San Jose, CA, USA, June 4-8, 2012 2012 (0) 2012
    Conference paper
    Neil Shah, Eric R. Schendel, Sriram Lakshminarasimhan, Saurabh V. Pendse, Terry Rogers, Nagiza F. Samatova.
    Improving I/O Throughput with PRIMACY: Preconditioning ID-Mapper for Compressing Incompressibility.
    2012 IEEE International Conference on Cluster Computing, CLUSTER 2012, Beijing, China, September 24-28, 2012 2012 (0) 2012
    Conference paper
    John Jenkins, James Dinan, Pavan Balaji, Nagiza F. Samatova, Rajeev Thakur.
    Enabling Fast, Noncontiguous GPU Data Movement in Hybrid MPI+GPU Environments.
    2012 IEEE International Conference on Cluster Computing, CLUSTER 2012, Beijing, China, September 24-28, 2012 2012 (0) 2012
    Conference paper
    John Jenkins, Eric R. Schendel, Sriram Lakshminarasimhan, David A. Boyuka II, Terry Rogers, Stéphane Ethier, Robert B. Ross, Scott Klasky, Nagiza F. Samatova.
    Byte-precision level of detail processing for variable precision analytics.
    SC Conference on High Performance Computing Networking, Storage and Analysis, SC '12, Salt Lake City, UT, USA - November 11 - 15, 2012 2012 (0) 2012
    Conference paper
    Zhenhuan Gong, Terry Rogers, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova.
    MLOC: Multi-level Layout Optimization Framework for Compressed Scientific Data Exploration with Heterogeneous Access Patterns.
    41st International Conference on Parallel Processing, ICPP 2012, Pittsburgh, PA, USA, September 10-13, 2012 2012 (0) 2012
    Conference paper
    Doel L. Gonzalez, Zhengzhang Chen, Isaac K. Tetteh, Tatdow Pansombut, Fredrick H. M. Semazzi, Vipin Kumar, Anatoli V. Melechko, Nagiza F. Samatova.
    Hierarchical Classifier-Regression Ensemble for Multi-phase Non-linear Dynamic System Response Prediction: Application to Climate Analysis.
    12th IEEE International Conference on Data Mining Workshops, ICDM Workshops, Brussels, Belgium, December 10, 2012 2012 (0) 2012
    Journal article
    Zhengzhang Chen, Kanchana Padmanabhan, Andrea M. Rocha, Yekaterina Shpanskaya, James R. Mihelcic, Kathleen Scott, Nagiza F. Samatova.
    Spice: discovery of phenotype-determining component interplays.
    BMC Systems Biology 2012, Volume 6 (0) 2012
    Conference paper
    Saurabh V. Pendse, Isaac K. Tetteh, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova.
    Toward Data-driven, Semi-automatic Inference of Phenomenological Physical Models: Application to Eastern Sahel Rainfall.
    Proceedings of the Twelfth SIAM International Conference on Data Mining, Anaheim, California, USA, April 26-28, 2012. 2012 (0) 2012
    Journal article
    Jiangtian Li, Xiaosong Ma, Srikanth B. Yoginath, Guruprasad Kora, Nagiza F. Samatova.
    Transparent runtime parallelization of the R scripting language.
    J. Parallel Distrib. Comput. 2011, Volume 71 (0) 2011
    Conference paper
    Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova.
    On the parameterized complexity of the Multi-MCT and Multi-MCST problems.
    J. Comb. Optim. 2011, Volume 21 (0) 2011
    Journal article
    Heshan Lin, Xiaosong Ma, Wu-chun Feng, Nagiza F. Samatova.
    Coordinating Computation and I/O in Massively Parallel Sequence Search.
    IEEE Trans. Parallel Distrib. Syst. 2011, Volume 22 (0) 2011
    Conference paper
    Tatdow Pansombut, William Hendrix, Zekai Jacob Gao, Brent E. Harrison, Nagiza F. Samatova.
    Biclustering-Driven Ensemble of Bayesian Belief Network Classifiers for Underdetermined Problems.
    IJCAI 2011, Proceedings of the 22nd International Joint Conference on Artificial Intelligence, Barcelona, Catalonia, Spain, July 16-22, 2011 2011 (0) 2011
    Conference paper
    Huseyin Sencan, Zhengzhang Chen, William Hendrix, Tatdow Pansombut, Fredrick H. M. Semazzi, Alok Choudhary, Vipin Kumar, Anatoli V. Melechko, Nagiza F. Samatova.
    Classification of Emerging Extreme Event Tracks in Multivariate Spatio-Temporal Physical Systems Using Dynamic Network Structures: Application to Hurricane Track Prediction.
    IJCAI 2011, Proceedings of the 22nd International Joint Conference on Artificial Intelligence, Barcelona, Catalonia, Spain, July 16-22, 2011 2011 (0) 2011
    Conference paper
    Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Scott Klasky, Rob Latham, Rob Ross, Nagiza F. Samatova.
    Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data.
    Euro-Par 2011 Parallel Processing - 17th International Conference, Euro-Par 2011, Bordeaux, France, August 29 - September 2, 2011, Proceedings, Part I 2011 (0) 2011
    Conference paper
    John Jenkins, Isha Arkatkar, John D. Owens, Alok Choudhary, Nagiza F. Samatova.
    Lessons Learned from Exploring the Backtracking Paradigm on the GPU.
    Euro-Par 2011 Parallel Processing - 17th International Conference, Euro-Par 2011, Bordeaux, France, August 29 - September 2, 2011, Proceedings, Part II 2011 (0) 2011
    Conference paper
    William Hendrix, Tatiana V. Karpinets, Byung-Hoon Park, Eric Schendel, Alok Choudhary, Nagiza F. Samatova.
    Sensitive and Specific Identification of Protein Complexes in "Perturbed" Protein Interaction Networks from Noisy Pull-Down Data.
    25th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2011, Anchorage, Alaska, USA, 16-20 May 2011 - Workshop Proceedings 2011 (0) 2011
    Conference paper
    Sriram Lakshminarasimhan, John Jenkins, Isha Arkatkar, Zhenhuan Gong, Hemanth Kolla, Seung-Hoe Ku, Stéphane Ethier, Jackie Chen, C. S. Chang, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova.
    ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data.
    Conference on High Performance Computing Networking, Storage and Analysis, SC 2011, Seattle, WA, USA, November 12-18, 2011 2011 (0) 2011
    Conference paper
    Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Zhengzhang Chen, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova.
    Efficient alpha, beta-motif Finder for Identification of Phenotype-related Functional Modules.
    BMC Bioinformatics 2011, Volume 12 (0) 2011
    Conference paper
    Kevin A. Wilson, Andrea M. Rocha, Kanchana Padmanabhan, Kuangyu Wang, Zhengzhang Chen, Ye Jin, James R. Mihelcic, Nagiza F. Samatova.
    Detecting Pathway Cross-Talks by Analyzing Conserved Functional Modules across Multiple Phenotype-Expressing Organisms.
    IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011, Atlanta, GA, USA, 12-15 November, 2011 2011 (0) 2011
    Conference paper
    Ye Jin, Sriram Lakshminarasimhan, Neil Shah, Zhenhuan Gong, Choong-Seock Chang, Jackie Chen, Stéphane Ethier, Hemanth Kolla, Seung-Hoe Ku, Scott Klasky, Robert Latham, Robert B. Ross, Karen Schuchardt, Nagiza F. Samatova.
    S-preconditioner for Multi-fold Data Reduction with Guaranteed User-Controlled Accuracy.
    11th IEEE International Conference on Data Mining, ICDM 2011, Vancouver, BC, Canada, December 11-14, 2011 2011 (0) 2011
    Conference paper
    Jaya Kawale, Stefan Liess, Arjun Kumar, Michael Steinbach, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi, Peter K. Snyder, Vipin Kumar.
    Data Guided Discovery of Dynamic Climate Dipoles.
    Proceedings of the 2011 Conference on Intelligent Data Understanding, CIDU 2011, October 19-21, 2011, Mountain View, California, USA 2011 (0) 2011
    Journal article
    William Hendrix, Andrea M. Rocha, Kanchana Padmanabhan, Alok N. Choudhary, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova.
    DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules.
    BMC Systems Biology 2011, Volume 5 (0) 2011
    Conference paper
    William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova.
    Theoretical underpinnings for maximal clique enumeration on perturbed graphs.
    Theor. Comput. Sci. 2010, Volume 411 (0) 2010
    Journal article
    Chongle Pan, Byung-Hoon Park, William H. McDonald, Patricia A. Carey, Jillian F. Banfield, Nathan Verberkmoes, Robert L. Hettich, Nagiza F. Samatova.
    A high-throughput
    BMC Bioinformatics 2010, Volume 11 (0) 2010
    Conference paper
    William Hendrix, Andrea M. Rocha, Mark T. Elmore, Joe Trien, Nagiza F. Samatova.
    Discovery of Enriched Biological Motifs Using Knowledge Priors with Application to Biohydrogen Production.
    International Conference on Bioinformatics Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA, 2 Volumes 2010 (0) 2010
    Conference paper
    Wenhong Tian, Matthew C. Schmidt, Wenbin Chen, Nagiza F. Samatova.
    Multiple Alignment of Large Interaction Networks by Fast Identifying Maximal Conserved Patterns.
    International Conference on Bioinformatics Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA, 2 Volumes 2010 (0) 2010
    Conference paper
    Tatdow Pansombut, Brent E. Harrison, Dennis Bahler, Nagiza F. Samatova.
    Improving the Performance of Bayesian Belief Network Classifiers via Decision Tree Based Feature Selection.
    Proceedings of the 2010 International Conference on Information Knowledge Engineering, IKE 2010, July 12-15, 2010, Las Vegas Nevada, USA 2010 (0) 2010
    Conference paper
    Wenbin Chen, Andrea M. Rocha, William Hendrix, Matthew C. Schmidt, Nagiza F. Samatova.
    The Multiple Alignment Algorithm for Metabolic Pathways without Abstraction.
    ICDMW 2010, The 10th IEEE International Conference on Data Mining Workshops, Sydney, Australia, 14 December 2010 2010 (0) 2010
    Conference paper
    Zhengzhang Chen, Kevin A. Wilson, Ye Jin, William Hendrix, Nagiza F. Samatova.
    Detecting and Tracking Community Dynamics in Evolutionary Networks.
    ICDMW 2010, The 10th IEEE International Conference on Data Mining Workshops, Sydney, Australia, 14 December 2010 2010 (0) 2010
    Conference paper
    Wenhong Tian, Nagiza F. Samatova.
    Pairwise Alignment of Interaction Networks by Fast Identification of Maximal Conserved Patterns.
    Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009 2009 (0) 2009
    Conference paper
    Amit C. Awekar, Nagiza F. Samatova, Paul Breimyer.
    Incremental all pairs similarity search for varying similarity thresholds.
    Proceedings of the 3rd Workshop on Social Network Mining and Analysis, SNAKDD 2009, Paris, France, June 28, 2009 2009 (0) 2009
    Journal article
    Paul Breimyer, Nathan David Green, Vinay Kumar, Nagiza F. Samatova.
    BioDEAL: community generation of biological annotations.
    BMC Med. Inf. Decision Making 2009, Volume 9 (0) 2009
    Conference paper
    Wenbin Chen, Matthew C. Schmidt, Wenhong Tian, Nagiza F. Samatova.
    A Fast, Accurate Algorithm for Identifying Functional Modules Through Pairwise Local Alignment of Protein Interaction Networks.
    International Conference on Bioinformatics Computational Biology, BIOCOMP 2009, July 13-16, 2009, Las Vegas Nevada, USA, 2 Volumes 2009 (0) 2009
    Conference paper
    Patricia Brent, Nathan David Green, Paul Breimyer, Ramya Krishnamurthy, Nagiza F. Samatova.
    Systematic Evaluation of Convergence Criteria in Iterative Training for NLP.
    Proceedings of the Twenty-Second International Florida Artificial Intelligence Research Society Conference, May 19-21, 2009, Sanibel Island, Florida, USA 2009 (0) 2009
    Conference paper
    Paul Breimyer, William Hendrix, Guruprasad Kora, Nagiza F. Samatova.
    pR: Lightweight, Easy-to-Use Middleware to Plugin Parallel Analytical Computing with R.
    Proceedings of the 2009 International Conference on Information Knowledge Engineering, IKE 2009, July 13-16, 2009, Las Vegas Nevada, USA, 2 Volumes 2009 (0) 2009
    Conference paper
    Paul Breimyer, Guruprasad Kora, Nagiza F. Samatova.
    Web-Enabled R for Large-Scale Collaborative Data Mining: A Survey.
    Proceedings of the 2009 International Conference on Information Knowledge Engineering, IKE 2009, July 13-16, 2009, Las Vegas Nevada, USA, 2 Volumes 2009 (0) 2009
    Conference paper
    Amit C. Awekar, Nagiza F. Samatova, Paul Breimyer.
    Incremental All Pairs Similarity Search for Varying Similarity Thresholds with Reduced I/O Overhead.
    Proceedings of the 2009 International Conference on Information Knowledge Engineering, IKE 2009, July 13-16, 2009, Las Vegas Nevada, USA, 2 Volumes 2009 (0) 2009
    Conference paper
    William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova.
    On perturbation theory and an algorithm for maximal clique enumeration in uncertain and noisy graphs.
    Proceedings of the 1st ACM SIGKDD Workshop on Knowledge Discovery from Uncertain Data, Paris, France, June 28, 2009 2009 (0) 2009
    Conference paper
    Amit C. Awekar, Nagiza F. Samatova.
    Fast Matching for All Pairs Similarity Search.
    2009 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2009, Milan, Italy, 15-18 September 2009, Main Conference Proceedings 2009 (0) 2009
    Conference paper
    Matthew C. Schmidt, Nagiza F. Samatova.
    An Algorithm for the Discovery of Phenotype Related Metabolic Pathways.
    2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009, Washington, DC, USA, 1-4 November 2009, Proceedings 2009 (0) 2009
    Conference paper
    Matthew C. Schmidt, Nagiza F. Samatova, Kevin Thomas, Byung-Hoon Park.
    A scalable, parallel algorithm for maximal clique enumeration.
    J. Parallel Distrib. Comput. 2009, Volume 69 (0) 2009
    Conference paper
    Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova.
    On parameterized complexity of the Multi-MCS problem.
    Theor. Comput. Sci. 2009, Volume 410 (0) 2009
    Conference paper
    Paul Breimyer, Guruprasad Kora, William Hendrix, Neil Shah, Nagiza F. Samatova.
    PR: Automatic parallelization of data-parallel statistical computing codes for R in hybrid multi-node and multi-core environments.
    Proceedings of the IADIS International Conference Applied Computing 2009, 19-21 November, Rome, Italy, 2 Volumes 2009 (0) 2009
    Conference paper
    Byung-Hoon Park, Nagiza F. Samatova, Rajesh Munavalli, Ramya Krishnamurthy, Houssain Kettani, Al Geist.
    Rapid and robust ranking of text documents in a dynamically changing corpus.
    The 6th ACS/IEEE International Conference on Computer Systems and Applications, AICCSA 2008, Doha, Qatar, March 31 - April 4, 2008 2008 (0) 2008
    Conference paper
    Byung-Hoon Park, Matthew C. Schmidt, Kevin Thomas, Tatiana V. Karpinets, Nagiza F. Samatova.
    Parallel, scalable, memory-efficient backtracking for combinatoria modeling of large-scale biological systems.
    22nd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2008, Miami, Florida USA, April 14-18, 2008 2008 (0) 2008
    Conference paper
    Heshan Lin, Xiaosong Ma, Jiangtian Li, Ting Yu, Nagiza F. Samatova.
    Adaptive Request Scheduling for Parallel Scientific Web Services.
    Scientific and Statistical Database Management, 20th International Conference, SSDBM 2008, Hong Kong, China, July 9-11, 2008, Proceedings 2008 (0) 2008
    Conference paper
    Bing Zhang, Byung-Hoon Park, Tatiana V. Karpinets, Nagiza F. Samatova.
    From pull-down data to protein interaction networks and complexes with biological relevance.
    Bioinformatics 2008, Volume 24 (0) 2008
    Conference paper
    Faisal N. Abu-Khzam, Nagiza F. Samatova, Mohamad A. Rizk, Michael A. Langston.
    The Maximum Common Subgraph Problem: Faster Solutions via Vertex Cover.
    2007 IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2007), 13-16 May 2007, Amman, Jordan 2007 (0) 2007
    Conference paper
    Xiaosong Ma, Jiangtian Li, Nagiza F. Samatova.
    Automatic Parallelization of Scripting Languages: Toward Transparent Desktop Parallel Computing.
    21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA 2007 (0) 2007
    Conference paper
    Faisal N. Abu-Khzam, Mohamad A. Rizk, Deema A. Abdallah, Nagiza F. Samatova.
    The Buffered Work-Pool Approach for Search-Tree Based Optimization Algorithms.
    Parallel Processing and Applied Mathematics, 7th International Conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007, Revised Selected Papers 2008 (0) 2007
    Conference paper
    Byung-Hoon Park, Bing Zhang, Tatiana V. Karpinets, Nagiza F. Samatova.
    Multi-stage Framework to Infer Protein Functional Modules from Mass Spectrometry Pull-Down Data with Assessment of Biological Relevance.
    Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007, Silicon Valley, CA, USA, November 2-4, 2007 2007 (0) 2007
    Conference paper
    Robert Sisneros, Chad Jones, Jian Huang, Jinzhu Gao, Byung-Hoon Park, Nagiza F. Samatova.
    A Multi-Level Cache Model for Run-Time Optimization of Remote Visualization.
    IEEE Trans. Vis. Comput. Graph. 2007, Volume 13 (0) 2007
    Conference paper
    Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova.
    Sampling streaming data with replacement.
    Computational Statistics Data Analysis 2008, Volume 52 (0) 2007
    Conference paper
    Christopher T. Symons, Nagiza F. Samatova, Ramya Krishnamurthy, Byung-Hoon Park, Tarik Umar, David Buttler, Terence Critchlow, David Hysom.
    Multi-Criterion Active Learning in Conditional Random Fields.
    18th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2006), 13-15 November 2006, Washington, DC, USA 2006 (0) 2006
    Conference paper
    James M. McCollum, Gregory D. Peterson, Chris D. Cox, Michael L. Simpson, Nagiza F. Samatova.
    The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior.
    Computational Biology and Chemistry 2006, Volume 30 (0) 2006
    Conference paper
    Srikanth B. Yoginath, Nagiza F. Samatova, David Bauer, Guruprasad Kora, George Fann, Al Geist.
    RScaLAPACK: High-Performance Parallel Statistical Computing with R and ScaLAPACK.
    Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, September 12-14, 2005 Imperial Palace Hotel, Las Vegas, Nevada, USA 2005 (0) 2005
    Conference paper
    W. Henry Suters, Faisal N. Abu-Khzam, Yun Zhang, Christopher T. Symons, Nagiza F. Samatova, Michael A. Langston.
    A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem.
    Computing and Combinatorics, 11th Annual International Conference, COCOON 2005, Kunming, China, August 16-29, 2005, Proceedings 2005 (0) 2005
    Conference paper
    Brandon Thurmon, James M. McCollum, Gregory D. Peterson, Chris D. Cox, Nagiza F. Samatova, Gary Sayler, Michael L. Simpson.
    Accelerating Exact Stochastic Simulation Using Reconfigurable Computing.
    Proceedings of The 2005 International Conference on Engineering of Reconfigurable Systems and Algorithms, ERSA 2005, Las Vegas, Nevada, USA, June 27-30, 2005 2005 (0) 2005
    Conference paper
    Heshan Lin, Xiaosong Ma, Praveen Chandramohan, Al Geist, Nagiza F. Samatova.
    Efficient Data Access for Parallel BLAST.
    19th International Parallel and Distributed Processing Symposium (IPDPS 2005), CD-ROM / Abstracts Proceedings, 4-8 April 2005, Denver, CO, USA 2005 (0) 2005
    Conference paper
    Yun Zhang, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova.
    Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology.
    Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing, November 12-18, 2005, Seattle, WA, USA, CD-Rom 2005 (0) 2005
    Conference paper
    George Ostrouchov, Nagiza F. Samatova.
    On FastMap and the Convex Hull of Multivariate Data: Toward Fast and Robust Dimension Reduction.
    IEEE Trans. Pattern Anal. Mach. Intell. 2005, Volume 27 (0) 2005
    Conference paper
    Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Al Geist, Nagiza F. Samatova.
    In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity.
    3rd International IEEE Computer Society Computational Systems Bioinformatics Conference (CSB 2004), 16-19 August 2004, Stanford, CA, USA 2004 (0) 2004
    Conference paper
    Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova, Al Geist.
    Reservoir-Based Random Sampling with Replacement from Data Stream.
    Proceedings of the Fourth SIAM International Conference on Data Mining, Lake Buena Vista, Florida, USA, April 22-24, 2004 2004 (0) 2004
    Conference paper
    Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F. Samatova.
    An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features.
    2nd IEEE Computer Society Bioinformatics Conference (CSB 2003), 11-14 August 2003, Stanford, CA, USA 2003 (0) 2003
    Conference paper
    Byung-Hoon Park, George Ostrouchov, Gong-Xin Yu, Al Geist, Andrey Gorin, Nagiza F. Samatova.
    Inference of Protein-Protein Interactions by Unlikely Profile Pair.
    Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 19-22 December 2003, Melbourne, Florida, USA 2003 (0) 2003
    Conference paper
    E. Wes Bethel, Greg Abram, John Shalf, Randy Frank, James P. Ahrens, Steve Parker, Nagiza F. Samatova, Mark Miller.
    Interoperability of Visualization Software and Data Models is NOT an Achievable Goal.
    14th IEEE Visualization 2003 Conference (VIS 2003), 19-24 October 2003, Seattle, WA, USA 2003 (0) 2003
    Conference paper
    Thomas E. Potok, Mark T. Elmore, Joel W. Reed, Nagiza F. Samatova.
    An Ontology-Based HTML to XML Conversion Using Intelligent Agents.
    HICSS 2002 (0) 2002
    Conference paper
    Nagiza F. Samatova, Al Geist, George Ostrouchov, Anatoli V. Melechko.
    Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways.
    16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts Proceedings 2002 (0) 2002
    Conference paper
    Faisal N. Abu-Khzam, Nagiza F. Samatova, George Ostrouchov, Michael A. Langston, Al Geist.
    Distributed Dimension Reduction Algorithms for Widely Dispersed Data.
    International Conference on Parallel and Distributed Computing Systems, PDCS 2002, November 4-6, 2002, Cambridge, USA 2002 (0) 2002
    Conference paper
    Nagiza F. Samatova, George Ostrouchov, Al Geist, Anatoli V. Melechko.
    RACHET: An Efficient Cover-Based Merging of Clustering Hierarchies from Distributed Datasets.
    Distributed and Parallel Databases 2002, Volume 11 (0) 2002
    Conference paper
    Thomas E. Potok, Nenad Ivezic, Nagiza F. Samatova.
    Agent-based Architecture for Flexible Lean Cell Design, Analysis and Evaluation.
    Global Engineering, Manufacturing and Enterprise Networks, IFIP TC5 WG5.3/5.7/5.12 Fourth International Conference on the Design of Information Infrastructure Systems for Manufacturing (DIISM 2000), Melbourne, Victoria, Australia 2001 (0) 2000
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