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Title |
Venue |
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Date |
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Conference paper
Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara.
A deductive database system PACADE for analyzing 3-D and secondary structures of protein.
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Computer Applications in the Biosciences 1993, Volume 9 |
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1993 |
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Conference paper
Setsuo Arikawa, Satoru Miyano, Ayumi Shinohara, Satoru Kuhara, Yasuhito Mukouchi, Takeshi Shinohara.
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns.
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New Generation Comput. 1993, Volume 11 |
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1993 |
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Conference paper
Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Yasuhito Mukouchi, Ayumi Shinohara, Takeshi Shinohara.
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns.
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FGCS 1992 |
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1992 |
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Conference paper
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara.
A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis.
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Theor. Comput. Sci. 2003, Volume 292 |
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2003 |
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Conference paper
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara.
A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis.
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Discovery Science, Third International Conference, DS 2000, Kyoto, Japan, December 4-6, 2000, Proceedings 2000 |
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2000 |
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Conference paper
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara.
Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function.
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RECOMB 2000 |
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2000 |
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Conference paper
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara.
Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function.
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Journal of Computational Biology 2000, Volume 7 |
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2000 |
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Conference paper
Hirofumi Suzaki, Satoru Kuhara.
An Extension Approach for Neural Networks by Introducing a Nearest Neighbor Algorithm in Relative Coordinates.
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JACIII 2010, Volume 14 |
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2010 |
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Conference paper
Yukihiro Maki, Yoriko Takahashi, Yuji Arikawa, Shoji Watanabe, Ken Aoshima, Yukihiro Eguchi, Takanori Ueda, Sachiyo Aburatani, Satoru Kuhara, Masahiro Okamoto.
An Integrated Comprehensive Workbench for Inferring Genetic Networks:
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J. Bioinformatics and Computational Biology 2004, Volume 2 |
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2004 |
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Conference paper
Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi.
Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins.
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HICSS (5) 1994 |
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1994 |
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Conference paper
Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara.
Application of a deductive database system to search for topological and similar three-dimensional structures in protein.
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Computer Applications in the Biosciences 1997, Volume 13 |
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1997 |
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Conference paper
Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano.
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network.
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J. Bioinformatics and Computational Biology 2003, Volume 1 |
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2003 |
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Conference paper
Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano.
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network.
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1st IEEE Computer Society Bioinformatics Conference (CSB 2002), 14-16 August 2002, Stanford, CA, USA 2002 |
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2002 |
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Conference paper
Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara.
BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences.
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Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995 1995 |
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1995 |
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Conference paper
Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano.
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks.
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J. Bioinformatics and Computational Biology 2004, Volume 2 |
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2004 |
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Conference paper
Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano.
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks.
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2nd IEEE Computer Society Bioinformatics Conference (CSB 2003), 11-14 August 2003, Stanford, CA, USA 2003 |
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2003 |
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Conference paper
Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano.
Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles.
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Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006 2006 |
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2006 |
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Journal article
Akio Nishikawa, Kenji Satou, Emiko Furuichi, Satoru Kuhara, Kazuo Ushijima.
Data Classification Component in a Deductive Database System and Its Application to Protein Structural Analysis.
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IEICE Transactions 1995, Volume 78 |
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1995 |
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Conference paper
Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto.
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling.
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Signal Processing 2003, Volume 83 |
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2003 |
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Conference paper
Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa.
Development of an integrated Database for Genome Mapping and Nucleotide Sequences.
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HICSS (5) 1994 |
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1994 |
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Conference paper
Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano.
Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection.
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ECCB 2003 |
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2003 |
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Conference paper
Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara.
Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations.
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2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008, 3-5 November 2008, Philadephia, Pennsylvania, USA 2008 |
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2008 |
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Conference paper
Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi.
Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique.
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Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997 1997 |
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1997 |
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Conference paper
Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada.
Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations.
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Proceedings of the 6th Joint Conference on Information Science, March 8-13, 2002, Research Triangle Park, North Carolina, USA 2002 |
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2002 |
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Conference paper
Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano.
Fast algorithm for extracting multiple unordered short motifs using bit operations.
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Inf. Sci. 2002, Volume 146 |
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2002 |
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Conference paper
Satoru Kuhara, Fumihiro Matsuo, Shouichi Futamura, A. Fujita, Takeshi Shinohara, Toshihisa Takagi, Yasubumi Sakaki.
GENAS: a database system for nucleic acid sequence analysis.
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Nucleic Acids Research 1984, Volume 12 |
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1984 |
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Conference paper
Satoshi Niijima, Satoru Kuhara.
Gene subset selection in kernel-induced feature space.
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Pattern Recognition Letters 2006, Volume 27 |
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2006 |
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Conference paper
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano.
Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions.
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SODA 1998 |
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1998 |
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Conference paper
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano.
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model.
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Theor. Comput. Sci. 2003, Volume 3 |
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2003 |
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Conference paper
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara.
Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model.
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Pacific Symposium on Biocomputing 1999 |
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1999 |
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Conference paper
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara.
Inferring qualitative relations in genetic networks and metabolic pathways.
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Bioinformatics 2000, Volume 16 |
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2000 |
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Conference paper
Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano.
Learning Conformation Rules.
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Discovery Science, 4th International Conference, DS 2001, Washington, DC, USA, November 25-28, 2001, Proceedings 2001 |
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2001 |
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Conference paper
Satoshi Niijima, Satoru Kuhara.
Multiclass Molecular Cancer Classification by Kernel Subspace Methods with Effective Kernel Parameter Selection.
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J. Bioinformatics and Computational Biology 2005, Volume 3 |
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2005 |
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Conference paper
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara.
Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides.
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Computational Science - ICCS 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part II 2005 |
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2005 |
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Conference paper
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara.
Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides.
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IJBRA 2005, Volume 1 |
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2005 |
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Conference paper
Satoshi Niijima, Satoru Kuhara.
Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE.
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BMC Bioinformatics 2006, Volume 7 |
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2006 |
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Conference paper
Hideki Hirakawa, S. Muta, Satoru Kuhara.
The hydrophobic cores of proteins predicted by wavelet analysis.
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Bioinformatics 1999, Volume 15 |
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1999 |
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Conference paper
Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano.
Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks.
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Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009 2009 |
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2009 |
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Conference paper
Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara.
Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs.
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Pacific Symposium on Biocomputing 1999 |
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1999 |
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Conference paper
Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano.
Use of Gene Networks for Identifying and Validating Drug Targets.
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J. Bioinformatics and Computational Biology 2003, Volume 1 |
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2003 |
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