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Title |
Venue |
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Date |
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Conference paper
Pawel Górecki, Oliver Eulenstein.
A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees.
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Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings 2012 |
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2012 |
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Conference paper
André Wehe, John Gordon Burleigh, Oliver Eulenstein.
Algorithms for Knowledge-Enhanced Supertrees.
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Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings 2012 |
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2012 |
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Conference paper
Pawel Górecki, John Gordon Burleigh, Oliver Eulenstein.
GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches.
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Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings 2012 |
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2012 |
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Conference paper
Pawel Górecki, Oliver Eulenstein.
Deep Coalescence Reconciliation with Unrooted Gene Trees: Linear Time Algorithms.
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Computing and Combinatorics - 18th Annual International Conference, COCOON 2012, Sydney, Australia, August 20-22, 2012. Proceedings 2012 |
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2012 |
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Journal article
Ruchi Chaudhary, John Gordon Burleigh, Oliver Eulenstein.
Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.
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BMC Bioinformatics 2012, Volume 13 |
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2012 |
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Journal article
Pawel Górecki, Oliver Eulenstein.
Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem.
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BMC Bioinformatics 2012, Volume 13 |
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2012 |
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Journal article
Wen-Chieh Chang 0002, Sudheer Vakati, Roland Krause, Oliver Eulenstein.
Exploring biological interaction networks with tailored weighted quasi-bicliques.
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BMC Bioinformatics 2012, Volume 13 |
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2012 |
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Journal article
Harris T. Lin, John Gordon Burleigh, Oliver Eulenstein.
Consensus properties for the deep coalescence problem and their application for scalable tree search.
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BMC Bioinformatics 2012, Volume 13 |
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2012 |
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Conference paper
Ruchi Chaudhary, John Gordon Burleigh, Oliver Eulenstein.
Algorithms for Rapid Error Correction for the Gene Duplication Problem.
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Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings 2011 |
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2011 |
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Conference paper
Pawel Górecki, Oliver Eulenstein.
A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees.
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Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings 2011 |
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2011 |
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Conference paper
Wen-Chieh Chang, Sudheer Vakati, Roland Krause, Oliver Eulenstein.
Mining Biological Interaction Networks Using Weighted Quasi-Bicliques.
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Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings 2011 |
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2011 |
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Conference paper
Harris T. Lin, John Gordon Burleigh, Oliver Eulenstein.
The Deep Coalescence Consensus Tree Problem is Pareto on Clusters.
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Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings 2011 |
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2011 |
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Conference paper
John Wiedenhoeft, Roland Krause, Oliver Eulenstein.
The Plexus Model for the Inference of Ancestral Multidomain Proteins.
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IEEE/ACM Trans. Comput. Biology Bioinform. 2011, Volume 8 |
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2011 |
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Conference paper
Oliver Eulenstein.
Invited: Reconciled gene trees and their applications.
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IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011, Orlando, FL, USA, February 3-5, 2011 2011 |
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2011 |
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Journal article
Pawel Górecki, John Gordon Burleigh, Oliver Eulenstein.
Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.
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BMC Bioinformatics 2011, Volume 12 |
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2011 |
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Journal article
Wen-Chieh Chang 0002, John Gordon Burleigh, David Fernández-Baca, Oliver Eulenstein.
An ILP solution for the gene duplication problem.
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BMC Bioinformatics 2011, Volume 12 |
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2011 |
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Conference paper
Max Homilius, John Gordon Burleigh, Oliver Eulenstein.
Triplet-Supertrees constructed from Minimum Triplet Presentations.
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Proceedings of the ISCA 2nd International Conference on Bioinformatics and Computational Biology, BICoB-2010, March 24-26, 2010, Sheraton Waikiki Hotel, Honolulu, Hawaii, USA 2010 |
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2010 |
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Journal article
Mukul S. Bansal, John Gordon Burleigh, Oliver Eulenstein.
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.
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BMC Bioinformatics 2010, Volume 11 |
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2010 |
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Conference paper
Ruchi Chaudhary, Mukul S. Bansal, André Wehe, David Fernández-Baca, Oliver Eulenstein.
iGTP: A software package for large-scale gene tree parsimony analysis.
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BMC Bioinformatics 2010, Volume 11 |
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2010 |
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Conference paper
John Gordon Burleigh, Mukul S. Bansal, Oliver Eulenstein, Todd J. Vision.
Inferring species trees from gene duplication episodes.
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Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, BCB 2010, Niagara Falls, NY, USA, August 2-4, 2010 2010 |
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2010 |
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Journal article
Mukul S. Bansal, John Gordon Burleigh, Oliver Eulenstein, David Fernández-Baca.
Robinson-Foulds Supertrees.
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Algorithms for Molecular Biology 2010, Volume 5 |
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2010 |
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Conference paper
André Wehe, Wen-Chieh Chang, Oliver Eulenstein, Srinivas Aluru.
A scalable parallelization of the gene duplication problem.
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J. Parallel Distrib. Comput. 2010, Volume 70 |
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2010 |
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Conference paper
John Wiedenhoeft, Roland Krause, Oliver Eulenstein.
Inferring Evolutionary Scenarios for Protein Domain Compositions.
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Bioinformatics Research and Applications, 6th International Symposium, ISBRA 2010, Storrs, CT, USA, May 23-26, 2010. Proceedings 2010 |
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2010 |
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Journal article
John Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein.
Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants.
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Journal of Computational Biology 2009, Volume 16 |
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2009 |
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Conference paper
Mukul S. Bansal, Wen-Chieh Chang 0002, Oliver Eulenstein, David Fernández-Baca.
Generalized Binary Tanglegrams: Algorithms and Applications.
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Bioinformatics and Computational Biology, First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings 2009 |
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2009 |
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Conference paper
Harris T. Lin, John Gordon Burleigh, Oliver Eulenstein.
Triplet supertree heuristics for the tree of life.
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BMC Bioinformatics 2009, Volume 10 |
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2009 |
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Conference paper
Mukul S. Bansal, Oliver Eulenstein, André Wehe.
The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI-Based Local Searches.
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IEEE/ACM Trans. Comput. Biology Bioinform. 2009, Volume 6 |
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2009 |
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Conference paper
Mukul S. Bansal, Oliver Eulenstein.
The multiple gene duplication problem revisited.
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Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008 2008 |
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2008 |
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Conference paper
John Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein.
Locating Multiple Gene Duplications through Reconciled Trees.
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Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings 2008 |
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2008 |
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Conference paper
Mukul S. Bansal, Oliver Eulenstein.
The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches.
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Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings 2008 |
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2008 |
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Conference paper
André Wehe, Mukul S. Bansal, John Gordon Burleigh, Oliver Eulenstein.
DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony.
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Bioinformatics 2008, Volume 24 |
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2008 |
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Conference paper
Mukul S. Bansal, Oliver Eulenstein.
An Omega(n^2/ log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.
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IEEE/ACM Trans. Comput. Biology Bioinform. 2008, Volume 5 |
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2008 |
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Conference paper
Mukul S. Bansal, John Gordon Burleigh, Oliver Eulenstein, André Wehe.
Heuristics for the Gene-Duplication Problem: A
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Research in Computational Molecular Biology, 11th Annual International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings 2007 |
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2007 |
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Conference paper
Mukul S. Bansal, Oliver Eulenstein.
An
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Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings 2007 |
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2007 |
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Conference paper
Wen-Chieh Chang 0002, Oliver Eulenstein.
Reconciling Gene Trees with Apparent Polytomies.
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Computing and Combinatorics, 12th Annual International Conference, COCOON 2006, Taipei, Taiwan, August 15-18, 2006, Proceedings 2006 |
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2006 |
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Conference paper
Duhong Chen, Oliver Eulenstein, David Fernández-Baca, Michael Sanderson.
Minimum-Flip Supertrees: Complexity and Algorithms.
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IEEE/ACM Trans. Comput. Biology Bioinform. 2006, Volume 3 |
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2006 |
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Conference paper
Duhong Chen, Oliver Eulenstein, David Fernández-Baca.
Rainbow: a toolbox for phylogenetic supertree construction and analysis.
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Bioinformatics 2004, Volume 20 |
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2004 |
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Conference paper
Duhong Chen, Oliver Eulenstein, David Fernández-Baca, Michael Sanderson.
Supertrees by Flipping.
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Computing and Combinatorics, 8th Annual International Conference, COCOON 2002, Singapore, August 15-17, 2002, Proceedings 2002 |
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2002 |
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Conference paper
J. Schonfeld, Oliver Eulenstein, Kent Vander Velden, Gavin J. P. Naylor.
Investigating Evolutionary Lines of Least Resistance Using the Inverse Protein-Folding Problem.
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Pacific Symposium on Biocomputing 2002 |
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2002 |
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Conference paper
Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork.
Towards detection of orthologues in sequence databases.
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Bioinformatics 1998, Volume 14 |
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1998 |
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Conference paper
Oliver Eulenstein, Martin Vingron.
On the Equivalence of Two Tree Mapping Measures.
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Discrete Applied Mathematics 1998, Volume 88 |
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1998 |
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Conference paper
Oliver Eulenstein, Boris Mirkin, Martin Vingron.
Duplication-Based Measures of Difference Between Gene and Species Trees.
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Journal of Computational Biology 1998, Volume 5 |
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1998 |
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Conference paper
Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork.
Towards detection of sequence orthologs.
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German Conference on Bioinformatics 1997 |
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1997 |
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